Ok, after having another look that black stuff is inside the head not the intake. If they have that black coating on the head from the factory I'm assuming that it's just flaking off and going through the motor and out the exhuast. Some ports only have a little another others are completly covered. The heads have never been ported. The bike as been runing great until the carbs started giving me trouble so I guess I won't worry about it then.
The compression and bleed down test sound like a good idea. I might do them but with 6000 miles on the engine I wouldn't think there would be anything wrong.