So my issue became less frequent, then I forgot about the issue when I sold the bike to my father in law. He called last week saying the bike won't start. I felt sick to my stomach figuring the bolts had backed out and made a big mess.
1st, the job itself, freakin' easy. I had myself worked up about it for no reason at all. Pulling the flywheel was fine as soon as I got some hardened bolts as I bent the shit ones that came with the puller.
What did piss me off was the dumb shit engineers at Yamaha who thought it would be a good idea instead of using lock tite on the bolts, but to ball peen the end so they wouldn't back out. In doing this, it messed up the threads when I pulled the starter clutch off. Now two issues came up that I wasn't prepared to deal with where I was working on the bike at. I had to chase threads on the magnet portion of the flywheel assembly, and get new allen head screws 8mm x 1.25 x 14mm long. Well I found some 20mm long and had to cut those down when I got home, along with tapping the threads to clean them up. The bike went back together like a glove. Next time I'll be aware of exactly what's needed, and I bet it takes less than an hour, or right around an hour to do it. Cake job.
Thanks for the info fellas.
I also got to ride the bike after it went back together. Brought a tear to my eye on the ride. The only vehicle I really really miss. *Sigh*