Assuming the bike is still spinning over freely, and the battery is still fully charged, I'm going to guess all the old gunk which was separated out of the old gas has travelled downstream just far enough to now be plugging up all your idle circuits etc, and now you may want to try the shotgun proceedure to clear the carbs, and/or pull them completely off and go throught them. Again, that's assuming the battery is fully charged enough to provide ample voltage to the CDI box while cranking.
And as most people are aware of what "assuming" can get you, I'd advise putting a volt meter across the battery while cranking to see what the voltage is doing while the start button is pressed in - that way you'll know for sure. You may have to best of both problems - low voltage & gunk in the carbs.