I hooked a 10' length of plastic tubing from the bleeder screw (use a zip tie to secure it), then ran the tube up over the handle bars and down into a container.
Top up master, close master.
pull lever, open bleeder screw until you feels the cylinder almost bottom out, close bleeder and release clutch lever. Wait for cylinder to refill and come back, then repeat.
This is the process I used and it worked fine. Just make sure you keep topping up the master cylinder and don't spill and brake fluid on the paint or scoops. I wrapped my master with an old towel to soak up an spills. I was averageing about 5-6 level pulls before I had to open and top up the master. This allowed me to bleed the line without introducing any air into it. Mind you I was only trying to flush it, but this might work for you. All in all, it took about 20 minutes to complete.