Fuel bowls remain full all the time, running & just sitting around.
For the fuel to continue running after the bike is shut off, the inlet needle would have to be stuck open AND then the only gas to continue trickling downward would be the amount of gas UP from that valve in the gas lines.
If the fuel pump is working properly, I'd think it would take a long time, very slowly, for the gas in the lines to finish trickling down through the carbs and on into the motor.
UNLESS, by some chance the fuel in the lines has a suctioning effect and is pulling gas all the way from the tank while the bike just sits there. It might be possible for the gas to continue syphoning off in this fashion until such time as the gas level in the tank becomes equal to the level of the floats in the carbs.
Did you, by chance, use compressed air at any time during your recent fuel pump repair or blow out any crap from the fuel lines?
I'm betting you will need to get the carbs off and go through your inlet valve assemblies to fix this one.
Don't light too many cigarettes in the garage until after you get this one figured out.