Correlation does not mean causation. Actually it could be 2 separate issues.
Occums razor says that all things being equal, the simplest answer (most likely answer) is usually correct. Now.....messing with the batteries probably means a coil wire that was bumped or pulled out just a bit. While your there clip about 1/4 of an inch off the end of the wire to clip off any corrosion.
BUT, the gen 1 is VERY susceptible to a clogged pilot jet, and will usually happen all of the sudden, so people think that its electrical in nature. Paper fuel filters let CRAP thru, especially if there is rust in the tank...etc.
So do a shotgun as well. Its very easy to do, and I know of people that do one everytime they change the plugs to keep the bike running crisp. Here are the directions. The only deviation that I do from the standard directions is to take out PAJ#2, to be able to get a full blast of air into the carbs. I learned it the hard way, and had a "clog" that I couldnt get rid of after 3 shotguns....and by adding the one step to get a full blast of air, the clog came out the 1st time. This was all done in one night because I had some dyno time reserved for in the morning on the 07.
https://vmax.lvlhead.com/tips/shotgun.htm